Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916373.1_cds_XP_016466078.1_58967
CDS Infomation

[gene=LOC107788861] [db_xref=GeneID:107788861] [protein=putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial] [protein_id=XP_016466078.1] [location=complement(join(107592..108382,108527..109778))] [gbkey=CDS]
Sequence

ATGCGCTTAAAGAACTTGTCACCACAAGACCTCAAACCTCTCCTATTGGGATGCAGACAT
AGTGCATTGATTTCTCAAATCCATGCTGTTATGGTATCATCTGGGCTGTTTACCAGTGGA
AACTCCTTAGCTCAATTAATATTGTCCTATGGTAGAGCGGGTGATCTAGAATCTGCCCAC
AAAGTGTTCGATAAAATTCCCCTGAGGAGAGTAGATTCATGGAATGCGATGTTAATTGCC
TATTCGAGGAATGAGTGCCCTGTTGAGGTCGTAAATGCTTATAAACAAATGGTTTTTGAA
GGCGTCAAACCTGATAGTTCAACTTTCACCGTGGCACTTAAGGCATGTGCGATTTTGCAG
GATTTGGAGAAGGGTGAAGTGATTTGGGAAAAGGTGGTCGAGTGTGGGTATGAAAATGAT
GTCTTTGTTGGGTCCTCTATTTTGAACTTGTATGCTAAATGTGGGAAGATGGACAAAGCA
GCAATTGTATTTGAAAAGATGCAGAAGAGGGATACTGTTTGTTGGACTACCATGATCACG
GGTATTGTACAGAGTGGTAAAGGGAGAGAGGCCGTGGATCTGTATCGGAGGATGCAAAAG
GAAGGCATGGTAAGTGATGGTGTTGTTATGCTGGGTTTGATGCAGGCATGTGCTAATATT
GCAGACACAAAATTGGGCTTGTCAGTTCATGGTTATATGATCCGCAGAGCTCTTCCTATG
GATGTGAATATGCTGACTAGCCTTGTTGATATGTATGCCAAGAATGGAGAGTTGGATCTA
GCTACTCGTGTATTTCGAAAGATGCCCTGTAAGAATACTGTTTCTTGGAGTGCTTTGATT
TCTGGCTTTGCTCAAAATGGCTTTGCTGTTAATGCTCTTCAGCTGTTGATAGAGATGCAA
CTGTTGGGACTCACACCTGATGTAGCTTCACTTGTAAGTGCACTTCTAGCATGTTCTCAC
ATTGGCTCTTTAAAATTGGGTAGGTCAATTCATGGTTATGTAGTTAGGAAAGTCATTATG
GACCAAGTTTTAAGTACAGCCTTTATTGACATGTACGCTAAATGTGGACTCATTTCTTGT
GCCCGTGCCCTTTATGAACACATCGGTTCCAAGGACTTGATATGTTGGAATACAATTATA
GCGTGCTATGGGATCCATGGGCTTGGAAGAGAGGCACTTACCCTTTTCCAGCAGATGAAG
GACAAGATAGAACCAGATCATGCAACTTTTGCTGCTCTTCTTTCAGCTTTGACTTTGAGT
CACTCGGGATTGGTGGTGGAAGGACGGCATTGGTTTGATGTCATGGTCAATGAATACAAT
ATTAAACCTTCTGAGAAGCACTATGCTTGTTTGGTTGATCTTTTGTCTCGAGCTGGTGAA
GTTGAAGAAGCTAAAGATATCATCATTTCTATGGAAATGAAACCTGGGCTTGCTGTTTGG
GTTGCCCTTCTATCTGGTTGCCACAAGCACAAGAAGTTTTTGATTGGAGAATTGGCAGCA
AACAGGGTACTTGAATTAATTCCAGAGAACATAGGTACTTTAGTATTAGCAGCAAATTTC
TTTGCGGCAGCAAAAATGTGGGATAAAGCAGCTGCTGTGAGGAAGGTTATGAAAAAGGCA
GGGATGAAAAAAGTTCCTGGCTACAGTGCTGTGGAGGTAAATGGAAGACTCCATGCTTTT
CTTATGGGTGATATAAGTCACCCTCAATATGAACAAATAATTGGACTTCTGTGCAATCTG
GAGAATGAGATGAAAGCTATGGGCTATGTGCCAAAGACTGAATTTGTGTTGCAGAATCTT
GAAGAAGAGGCCAAAGTGAAAGTGTTGTGTTATCATAGTGAGAGACTTGCCATTGCTTTT
GGACTCTTAAACACTGCACCGGGAACCAGGTTGCTTATCACAAAGAACCTGAGGGTCTGT
GGTGACTGTCATGAAGTAACAAAGTTTATCTCTGTTATAGTAAAAAGAGAGATTATTGTA
AGGGATGTTAAACGATTTCATCACTTTAAGGATGGAAGATGCTCCTGCGGTGATTACTGG
TGA

Peptide Sequence

PEP ID

XP_016466078.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Nicotiana tabacum]
Sequence

MRLKNLSPQDLKPLLLGCRHSALISQIHAVMVSSGLFTSGNSLAQLILSYGRAGDLESAH
KVFDKIPLRRVDSWNAMLIAYSRNECPVEVVNAYKQMVFEGVKPDSSTFTVALKACAILQ
DLEKGEVIWEKVVECGYENDVFVGSSILNLYAKCGKMDKAAIVFEKMQKRDTVCWTTMIT
GIVQSGKGREAVDLYRRMQKEGMVSDGVVMLGLMQACANIADTKLGLSVHGYMIRRALPM
DVNMLTSLVDMYAKNGELDLATRVFRKMPCKNTVSWSALISGFAQNGFAVNALQLLIEMQ
LLGLTPDVASLVSALLACSHIGSLKLGRSIHGYVVRKVIMDQVLSTAFIDMYAKCGLISC
ARALYEHIGSKDLICWNTIIACYGIHGLGREALTLFQQMKDKIEPDHATFAALLSALTLS
HSGLVVEGRHWFDVMVNEYNIKPSEKHYACLVDLLSRAGEVEEAKDIIISMEMKPGLAVW
VALLSGCHKHKKFLIGELAANRVLELIPENIGTLVLAANFFAAAKMWDKAAAVRKVMKKA
GMKKVPGYSAVEVNGRLHAFLMGDISHPQYEQIIGLLCNLENEMKAMGYVPKTEFVLQNL
EEEAKVKVLCYHSERLAIAFGLLNTAPGTRLLITKNLRVCGDCHEVTKFISVIVKREIIV
RDVKRFHHFKDGRCSCGDYW

Transcript Sequence

Gene sequence data has not been registered.